Plot results of sensitivity analysis.

Plot results of sensitivity analysis.

Usage

plot_sensitivity(
  x,
  metric = "GCA.Eff",
  assay = NULL,
  y = "",
  xlab = metric,
  ylab = ""
)

Arguments

x

GeoTox object.

metric

metric to plot. Valid choices are "GCA.Eff", "IA.Eff", "GCA.HQ.10", and "IA.HQ.10".

assay

which assay to plot, if multiple exist.

y

y value or text for bottom of ridge plot.

xlab

x-axis label.

ylab

y-axis label.

Value

ggplot2 object.

Examples

# Required GeoTox fields are generated by first running [calculate_response]
# and [sensitivity_analysis] on a GeoTox object. This will create the fields
# `resp` and `sensitivity`. For this example, dummy data will be used.
make_data <- function(n = 5, metric = "GCA.Eff") {
  list(stats::setNames(data.frame(1:n, runif(n)),
                       c("sample", metric)))
}

geoTox <- GeoTox()
geoTox$resp <- make_data()
geoTox$sensitivity <- list(age = make_data(),
                           obesity = make_data(),
                           css_params = make_data(),
                           fit_params = make_data(),
                           C_ext = make_data())

plot_sensitivity(geoTox)
#> Picking joint bandwidth of 0.11